File structure

Files are organised as follows:

build                         // Where OpenCOR is built
cmake                         // Files used to build OpenCOR
distrib                       // Files used to package OpenCOR
 ├─ linux                     // Linux-specific
 ├─ macos                     // macOS-specific
 └─ windows                   // Windows-specific
doc                           // Documentation
ext                           // Where external packages are retrieved
i18n                          // Internationalisation files
models                        // Sample CellML files
 └─ tests                     // Test files
     ├─ cellml                // Test CellML files
     ├─ combine               // Test COMBINE archives
     ├─ jupyter               // Test Jupyter notebooks
     └─ sedml                 // Test SED-ML files
res                           // Resource files
 ├─ flags                     // Images from the Printable world flags library
 ├─ oxygen                    // Images from the Oxygen library
 └─ translations              // Qt translation files
scripts                       // Scripts used to build/package OpenCOR
src                           // Source code files
 ├─ 3rdparty                  // Third-party libraries statically linked to OpenCOR
 │   ├─ diff_match_patch      // diff-match-patch
 │   ├─ linux                 // Linux-specific
 │   │   ├─ icu               // ICU
 │   │   └─ mesa              // Mesa
 │   ├─ QtSingleApplication   // QtSingleApplication
 │   └─ QtWebKit              // QtWebKit
 ├─ misc                      // Files that do not fit anywhere else
 ├─ plugins                   // Plugins
 │   ├─ dataStore             // Plugins to store and manipulate data
 │   ├─ editing               // Plugins to edit files
 │   ├─ miscellaneous         // Plugins for various things
 │   ├─ organisation          // Plugins to organise files
 │   ├─ sample                // Sample plugins
 │   ├─ simulation            // Plugins to simulate files
 │   ├─ solver                // Plugins to access various solvers
 │   ├─ support               // Plugins to support various third-party libraries
 │   ├─ test                  // Test plugins
 │   ├─ thirdParty            // Plugins to access various third-party libraries
 │   │   ├─ CellMLAPI         // The CellML API as a plugin
 │   │   ├─ libBioSignalML    // libBioSignalML as a plugin
 │   │   ├─ libgit2           // libgit2 as a plugin
 │   │   ├─ libNuML           // libNuML as a plugin
 │   │   ├─ libSBML           // libSBML as a plugin
 │   │   ├─ libSEDML          // libSEDML as a plugin
 │   │   ├─ LibXDiff          // LibXDiff as a plugin
 │   │   ├─ LLVMClang         // LLVM+Clang as a plugin
 │   │   ├─ OAuth             // OAuth 2.0 for Qt as a plugin
 │   │   ├─ OpenSSL           // OpenSSL as a plugin
 │   │   ├─ Python            // Python as a plugin
 │   │   ├─ PythonPackages    // Python packages as a plugin
 │   │   ├─ PythonQt          // PythonQt as a plugin
 │   │   ├─ QScintilla        // QScintilla as a plugin
 │   │   ├─ Qwt               // Qwt as a plugin
 │   │   ├─ SUNDIALS          // Part of SUNDIALS as a plugin
 │   │   ├─ Zinc              // Zinc as a plugin
 │   │   └─ zlib              // zlib as a plugin
 │   ├─ tools                 // Plugins to access various tools
 │   └─ widget                // Plugins to access various ad hoc widgets
 ├─ tests                     // The main program for the tests
 │   ├─ res                   // Resource files
 │   └─ src                   // Source code files
 └─ windows                   // Windows CLI version of OpenCOR